Publications IPMB

ZORA Publication List

Publications

• 2026

  • Plüss, A. J. (2026). Epiallele Diversity across Space and Time in Natural Populations of $\textit{Arabidopsis thaliana}$ (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-292973
  • Heuberger, M. E. (2026). Transposable Elements as Drivers of Eukaryotic Genome Evolution (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-292956
  • Halstead-Nussloch, G., Okada, M., Haberer, G., Lux, T., Islam, A. S. M. F., Hatakeyama, M., Briskine, R., White, B., Hall, A., Pozniak, C., Walkowiak, S., Klymiuk, V., Byrns, B., Nilsen, K., Ens, J., Wiebe, K., Diaye, A. N., Hucl, P. J., Fu, B. X., … Shimizu, K. K. (2026). Purifying selection on deleterious variants affected by the combination of subgenomes and gene expression in bread wheat Cell Reports, 116785. https://doi.org/10.1016/j.celrep.2025.116785
  • Kracik-Dyer, E. G. (2026). Super-Resolution Imaging of Nanoscale Chromatin Dynamics in $\textit{Arabidopsis thaliana}$ (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-283343
  • Heredia-Ponce, Z., Bailly, A., & Eberl, L. (2026). High-resolution visualization of biofilm matrix development in space and time using fluorescent stains for cellulose Npj Biofilms and Microbiomes, 12, 26. https://doi.org/10.1038/s41522-025-00892-7
  • Song, B., Choi, S., Kong, L., Kim, S.-I., Fliegmann, J., Li, X., Gao, Y., DeFalco, T. A., Hu, M., Li, M., Zhao, Y., Wang, H., Ma, S., Shan, L., Nürnberger, T., He, P., Zipfel, C., & Zhou, J.-M. (2026). New alleles of Arabidopsis BIK1 reinforce its predominant role in pattern-triggered immunity and caution interpretations of other reported functions Nature Plants, 12, 284–293. https://doi.org/10.1038/s41477-025-02187-3

• 2025

  • Paniagua-López, M., Martín-Lorenzo, L., Silva-Castro, G. A., Siles, J. A., Valzano-Held, A., Palma, F., Romera, I. G., & López-Gómez, M. (2025). Bioremediation of Pendimethalin by the Saprophytic Fungi Coriolopsis rigida and Fusarium lateritium Rescues Symbiotic Abilities of Phaseolus vulgaris and Increases Soil Microbial Activities Journal of Soil Science and Plant Nutrition, online. https://doi.org/10.1007/s42729-025-02851-9
  • Jigisha. (2025). An Evolutionary Analysis of Populations of Wheat and Triticale Powdery Mildew in Europe (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-281229
  • Snoeck, S., Zhang, L., Studer, V., Kim, G., Fernández-Fernández, Á. D., Nürnberger, T., & Zipfel, C. (2025). β-sheet stabilization of the island domain underlies ligand-induced LRR-RP activation of plant immune signaling Nature Communications, 16, 10958. https://doi.org/10.1038/s41467-025-66119-7
  • Yu, X., Liu, J., Wang, W., Shen, J., Shi, K., Li, J.-F., Ye, J., Rhodes, J., Zipfel, C., Li, C., Li, J., Yan, J., Lu, Y., & Cai, Y. (2025). Plant-derived peptides: From identification to agronomic applications Molecular Plant, 18, 1963–1982. https://doi.org/10.1016/j.molp.2025.11.004
  • Alfreider, A., Posch, T., & Summerer, M. (2025). Depth-dependent distribution patterns of ammonia- and nitrite-oxidizing microorganisms in the water column of stratified lakes Scientific Reports, 15(1), 42232. https://doi.org/10.1038/s41598-025-26324-2
  • Taylor, K., Dixon, R., Taleski, M., Hintzsche, J., Aldiss, Z., Massel, K., Robinson, H., Gagliardini, V., Grossniklaus, U., Godwin, I., Hickey, L., & Djordjevic, M. A. (2025). CEPR1 function across plant lineages: peptide hormone recognition by cereal crop orthologs and developmental roles in barley Journal of Experimental Botany, 76, 5861–5876. https://doi.org/10.1093/jxb/eraf316
  • Hou, X., Bender, K. W., Fernández-Fernández, Á. D., Kadler, G., Gupta, S., Häfliger, M., Guérin, A., Diet, A., Roffler, S., Campanini, D. A., Wicker, T., Zipfel, C., & Ringli, C. (2025). The Arabidopsis phosphatase PP2C12 negatively regulates LRX-RALF-FER-mediated cell wall integrity sensing The EMBO Journal, 45, 243–260. https://doi.org/10.1038/s44318-025-00614-x
  • Meyer, W. B., Barkhuizen-Roode, H., Rothmann, L., Derman, S., Mian, S., Vorster, A. A., Van Heerden, C. J., Leitch, I. J., Van Jaarsveld, E., & Prins, R. (2025). Long-read de novo assembly of the spekboom (Portulacaria afra) genome Scientific Data, 12, 1740. https://doi.org/10.1038/s41597-025-06019-z
  • Denic, D. (2025). Unlocking Epigenetic Variation to Breed Sustainable Crops in a Changing Climate (Dissertation, University of Zurich)
  • Golaz, D. (2025). Elucidation of the Molecular Mechanisms Underlying the Adaptation of the Nitrogen-Fixing Symbiont $\textit{Paraburkholderia phymatum}$ in Simulated Microgravity (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-279957
  • Hug, L. A., Hatzenpichler, R., Moraru, C., Soares, A. R., Meyer, F., Heyder, A., The Data Reuse Consortium, Abdallah, R. Z., Abdalrahem, A., Abdulkadir, N., Adesiyan, I. M., Alteio, L., Anantharaman, K., Anderson, R., Andrei, A.-S., Baeza, J. A., Bak, F., Baker, B., Bartholomäus, A., … et al. (2025). A roadmap for equitable reuse of public microbiome data Nature Microbiology, 10, 2384–2395. https://doi.org/10.1038/s41564-025-02116-2
  • Kamal, M. M., Cheng, Y.-H., Chu, L.-W., Nguyen, P., Liu, C.-F. J., Liao, C.-W., Posch, T., & Leu, J.-Y. (2025). Environment-dependent mutualism–parasitism transitions in the incipient symbiosis between Tetrahymena utriculariae and Micractinium tetrahymenae The ISME Journal, 19, wraf203. https://doi.org/10.1093/ismejo/wraf203
  • Wiehlmann, L., Adams, T., Urbanke, C., Horatzek, S., Jordan, D., Rosenboom, I., Eberl, L., & Tümmler, B. (2025). Versatile roles of rubredoxin reductase of Pseudomonas aeruginosa TBCF10839 in virulence and stress protection PLoS Pathogens, 21, e1013465. https://doi.org/10.1371/journal.ppat.1013465
  • Salcher, M., Layoun, P., Fernandes, C., Chiriac, M.-C., Bulzu, P.-A., Ghai, R., Shabarova, T., Lanta, V., Callieri, C., Sonntag, B., Posch, T., Lepori, F., Znachor, P., & Haber, M. (2025). Bringing the uncultivated microbial majority of freshwater ecosystems into culture Nature Communications, 16, 7971. https://doi.org/10.1038/s41467-025-63266-9

Pagination