Publications IPMB

ZORA Publication List

Publications

• 2024

  • Desnoyer, Nicholas. The Role and Conservation of the $\textit{Cr}$RLK1L Signalling Pathway. 2024, University of Zurich, Faculty of Science.
  • Labouyrie, Maeva Patricia. Soil Biodiversity Assessment across Europe. 2024, University of Zurich, Faculty of Science.
  • Antunes Westmann, Cauã. Navigating Spaces of the Possible: In Vivo Genotype-Phenotype Maps of Gene Regulation. 2024, University of Zurich, Faculty of Science.
  • Sotiropoulos, Alexandros G; Sánchez-Martín, Javier; Widrig, Victoria; Isaksson, Jonatan; Bernasconi, Zoe; Koller, Teresa; Bearth, Giulia; Herren, Gerhard; Wicker, Thomas; Keller, Beat (2024). A fictional field case study to understand the genetic basis of host-fungal pathogen interactions using the wheat powdery mildew-wheat pathosystem. Journal of Biological Education, 58(5):1022-1034.
  • Bernasconi, Zoe Maria Luisa Bartolomea. Race-Specific Resistance Mechanisms and Evasion from Recognition: Insights from the Wheat-Powdery Mildew Pathosystem. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • McLaughlin, Sarah Ashley. Unraveling Rhizosphere Communication: Characterization of Root Exudation for Bacterial Microbiome Recruitment across Species and Environments. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Rutowicz, Kinga; Lüthi, Joel; de Groot, Reinoud; Holtackers, René; Yakimovich, Yauhen; Pazmiño, Diana M; Gandrillon, Olivier; Pelkmans, Lucas; Baroux, Célia (2024). Multiscale chromatin dynamics and high entropy in plant iPSC ancestors. Journal of Cell Science, 137(20):jcs261703.
  • Makechemu, Moffat. Molecular Insights Into the Perception of Fungal-Derived Molecular Patterns and Its Impact on Disease Resistance. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Kaufmann, Moritz. Unravelling the Impact of Chitin Soil Amendment on Plant Using Omics Technologies with Lettuce as a Model Organism. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Herold, Laura. Characterization of Receptor Kinases Involved in Plant-Pathogen Interactions. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Moreira, Carlos J S; Escórcio, Rita; Bento, Artur; Bjornson, Marta; Herold, Laura; Tomé, Ana S; Martins, Celso; Fanuel, Mathieu; Martins, Isabel; Bakan, Benedicte; Zipfel, Cyril; Silva Pereira, Cristina (2024). Cutin-Derived Oligomers Induce Hallmark Plant Immune Responses. Journal of Experimental Botany, 75(16):5146-5161.
  • Hertle, Lukas; Sevim, Semih; Zhu, Jiawei; Pustovalov, Vitaly; Veciana, Andrea; Llacer‐Wintle, Joaquin; Landers, Fabian C; Ye, Hao; Chen, Xiang‐Zhong; Vogler, Hannes; Grossniklaus, Ueli; Puigmartí‐Luis, Josep; Nelson, Bradley J; Pané, Salvador (2024). A Naturally Inspired Extrusion‐Based Microfluidic Approach for Manufacturing Tailorable Magnetic Soft Continuum Microrobotic Devices. Advanced Materials, 36(31):e2402309.
  • Kofler, Xeniya Valeriyivna; Grossniklaus, Ueli; Schiestl, Florian P; Frachon, Léa (2024). Uncovering genes involved in pollinator‐driven mating system shifts and selfing syndrome evolution in Brassica rapa. New Phytologist, 243(3):1220-1230.
  • Russo, Alessia; Alessandrini, Mattia; El Baidouri, Moaine; Frei, Daniel; Galise, Teresa Rosa; Gaidusch, Lara; Oertel, Hannah F; Garcia Morales, Sara E; Potente, Giacomo; Tian, Qin; Smetanin, Dmitry; Bertrand, Joris A M; Onstein, Renske E; Panaud, Olivier; Frey, Jürg E; Cozzolino, Salvatore; Wicker, Thomas; Xu, Shuqing; Grossniklaus, Ueli; Schlüter, Philipp M (2024). Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation. Nature Communications, 15(1):6308.
  • Leber, Rebecca. Genetic Diversity and Powdery Mildew Resistance of Bread Wheat Landraces. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Chu, Jiashu. Functional Characterization and Conservation of RLCK-VII/PBL Family Members and Substrates in Land Plants. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Earp, Jennifer. Structural and Functional Characterization of the Mycobacterial Siderophore Exporter MmpL4. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Paganini, Leonardo. Untangling a Regulatory Network Involving a Novel Diazeniumdiolate Signal in $\textit{Pseudomonas syringae}$. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Li, Yanru. H1 Citrullination – An Atypical Modification Regulating Germline Fate in Arabidopsis. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Kaufmann, Moritz; Li, Leilei; Van Poucke, Christof; Rhyner, Nicola; De Tender, Caroline; Uyttendaele, Mieke; Heyndrickx, Marc; Zipfel, Cyril; Pothier, Joël F; Bart, Cottyn (2024). Soil type and associated microbiomes influences chitin’s growth-promotion effect in lettuce. Phytobiomes Journal, 8(3):248-261.
  • Marash, Iftah; Leibman-Markus, Meirav; Gupta, Rupali; Israeli, Alon; Teboul, Naama; Avni, Adi; Ori, Naomi; Bar, Maya (2024). Abolishing ARF8A activity promotes disease resistance in tomato. Plant Science, 343:112064.
  • Israeli, Alon (2024). TOR coordinates cytokinin and gibberellin signals mediating development and defense. Plant, Cell & Environment, 47(2):629-650.
  • Mühlenbeck, Henning. Investigating the Role and Regulation of Tyrosine Phosphorylation in Plant Receptor Kinase-Based Immune Signaling. 2024, University of Zurich, Faculty of Science.
  • Minadakis, Nikolaos; Kaderli, Lars; Horvath, Robert; Bourgeois, Yann; Xu, Wenbo; Thieme, Michael; Woods, Daniel P; Roulin, Anne C (2024). Polygenic architecture of flowering time and its relationship with local environments in the grass Brachypodium distachyon. Genetics, 227(1):iyae042.
  • Serra Moncadas, Lucas; Hofer, Cyrill; Bulzu, Paul-Adrian; Pernthaler, Jakob; Andrei, Adrian-Stefan (2024). Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis. Nature Communications, 15(1):3421.
  • Horvath, Robert; Minadakis, Nikolaos; Bourgeois, Yann; Roulin, Anne C (2024). The evolution of transposable elements in Brachypodium distachyon is governed by purifying selection, while neutral and adaptive processes play a minor role. eLife, 12:RP93284.
  • Tyson, Jess; Radford, Paul; Lambert, Carey; Till, Rob; Huwiler, Simona G; Lovering, Andrew L; Sockett, R Elizabeth (2024). Prey killing without invasion by Bdellovibrio bacteriovorus defective for a MIDAS-family adhesin. Nature Communications, 15(1):3078.
  • Manrique, Silvia; Cavalleri, Alex; Guazzotti, Andrea; Villarino, Gonzalo H; Simonini, Sara; Bombarely, Aureliano; Higashiyama, Tetsuya; Grossniklaus, Ueli; Mizzotti, Chiara; Pereira, Ana Marta; Coimbra, Silvia; Sankaranarayanan, Subramanian; Onelli, Elisabetta; Masiero, Simona; Franks, Robert G; Colombo, Lucia (2024). HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation. Plant Physiology, 194(4):2117-2135.
  • Villena-Alemany, Cristian; Mujakić, Izabela; Fecskeová, Livia K; Woodhouse, Jason; Auladell, Adrià; Dean, Jason; Hanusová, Martina; Socha, Magdalena; Gazulla, Carlota R; Ruscheweyh, Hans-Joachim; Sunagawa, Shinichi; Silva Kavagutti, Vinicius; Andrei, Adrian-Stefan; Grossart, Hans-Peter; Ghai, Rohit; Koblížek, Michal; Piwosz, Kasia (2024). Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Microbiome, 12(1):65.
  • Koller, Teresa; Camenzind, Marcela; Jung, Esther; Brunner, Susanne; Herren, Gerhard; Armbruster, Cygni; Keller, Beat (2024). Pyramiding of transgenic immune receptors from primary and tertiary wheat gene pools improves powdery mildew resistance in the field. Journal of Experimental Botany, 75(7):1872-1886.
  • Luthra, Sakshi. Antibiotic Resistance Characteristics of $\textit{Mycobacterium}$ $\textit{Abscessus}$ Rely on Specific Outer Membrane Porins and Surface-Associated Glycopeptidolipids. 2024, University of Zurich, Faculty of Science.
  • Minadakis, Nikolaos. The Genomics of Environmental Adaptation of a Mediterranean Grass. 2024, University of Zurich, Faculty of Science.
  • Isaksson, Jonatan. Insight into the Molecular Mechanisms of the Interactions and Functions of the Wheat Powdery Mildew AVRPM3 and SVRPM3$^t{a1/f1}$ Effectors and the Wheat NLR-Type Immune Receptor PM3b. 2024, University of Zurich, Mathematisch-naturwissenschaftliche Fakultät.
  • Thieme, Michael; Minadakis, Nikolaos; Himber, Christophe; Keller, Bettina; Xu, Wenbo; Rutowicz, Kinga; Matteoli, Calvin; Böhrer, Marcel; Rymen, Bart; Laudencia-Chingcuanco, Debbie; Vogel, John P; Sibout, Richard; Stritt, Christoph; Blevins, Todd; Roulin, Anne C (2024). Transposition of HOPPLA in siRNA-deficient plants suggests a limited effect of the environment on retrotransposon mobility in Brachypodium distachyon. PLoS Genetics, 20(3):e1011200.
  • Rain-Franco, Angel; Peter, Hannes; de Moraes, Guilherme Pavan; Beier, Sara (2024). The cost of adaptability: resource availability constrains functional stability under pulsed disturbances. mSphere, 9(2):e0072723.
  • Simonini, Sara; Bencivenga, Stefano; Grossniklaus, Ueli (2024). A paternal signal induces endosperm proliferation upon fertilization in Arabidopsis. Science, 383(6683):646-653.
  • Cabre, Lisa; Jing, Lun; Makechemu, Moffat; Heluin, Kylhan; El Khamlichi, Sarah; Leprince, Jérôme; Kiefer-Meyer, Marie Christine; Pluchon, Sylvain; Mollet, Jean-Claude; Zipfel, Cyril; Nguema-Ona, Eric (2024). Additive and Specific Effects of Elicitor Treatments on the Metabolic Profile of Arabidopsis thaliana. Molecular Plant-Microbe Interactions, 37(2):112-126.
  • Camenzind, Marcela; Koller, Teresa; Armbruster, Cygni; Jung, Esther; Brunner, Susanne; Herren, Gerhard; Keller, Beat (2024). Breeding for durable resistance against biotrophic fungal pathogens using transgenes from wheat. Molecular Breeding, 44(2):8.
  • Levins, Jonathan; Dierschke, Tom; Bowman, John L (2024). A subclass II bHLH transcription factor in Marchantia polymorpha gives insight into the ancestral land plant trait of spore formation. Current Biology, 34(4):895-901.e5.
  • García-Palacios, Pablo; Bradford, Mark A; Benavente-Ferraces, Iria; de Celis, Miguel; Delgado-Baquerizo, Manuel; García-Gil, Juan Carlos; Gaitán, Juan J; Goñi-Urtiaga, Asier; Mueller, Carsten W; Panettieri, Marco; Rey, Ana; Sáez-Sandino, Tadeo; Schuur, Edward A G; Sokol, Noah W; Tedersoo, Leho; Plaza, César (2024). Dominance of particulate organic carbon in top mineral soils in cold regions. Nature Geoscience, 17(2):145-150.
  • Goto, Yukihisa; Maki, Noriko; Sklenar, Jan; Derbyshire, Paul; Menke, Frank L H; Zipfel, Cyril; Kadota, Yasuhiro; Shirasu, Ken (2024). The phagocytosis oxidase/Bem1p domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity. New Phytologist, 241(4):1763-1779.
  • Labouyrie, Maëva; Ballabio, Cristiano; Romero, Ferran; Panagos, Panos; Jones, Arwyn; Tedersoo, Leho; van der Heijden, Marcel G A; Orgiazzi, Alberto (2024). Interaction effects of pH and land cover on soil microbial diversity are climate-dependent. Environmental Microbiology, 26(2):e16572.
  • Zhang, Changfeng; de Pasquale, Simone; Hartman, Kyle; Stanley, Claire E; Berendsen, Roeland L; van der Heijden, Marcel G A (2024). The microbial contribution to litter decomposition and plant growth. Environmental Microbiology Reports, 16(1):e13205.
  • Martin, Francis M; van der Heijden, Marcel G A (2024). The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application. New Phytologist:online.
  • Zhang, Changfeng; van der Heijden, Marcel G A; Dodds, Bethany K; Nguyen, Thi Bich; Spooren, Jelle; Valzano-Held, Alain; Cosme, Marco; Berendsen, Roeland L (2024). A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization. Microbiome, 12(1):13.
  • Zhu, Baoli; Chen, Zengming; Hu, Hangwei; Andrei, Adrian-Stefan; Li, Yong (2024). Greenhouse gas emissions and mitigation: microbes, mechanisms and modeling. Frontiers in Microbiology, 15:1363814.
  • Hofer, Cyrill; Wälchli, Denise; Moncadas, Lucas Serra; Rain-Franco, Angel; Andrei, Adrian-Stefan (2024). A high-quality genome of an undescribed Flavobacterium species uncovered using Q20+ Nanopore chemistry. Microbiology Resource Announcements, 13(1):online.
  • Serra Moncadas, Lucas; Schnellmann, Vanessa; Hofer, Cyrill; Rain-Franco, Angel; Andrei, Adrian-Stefan (2024). Complete genome of Flavobacterium pectinovorum str. ZE23VCel01 obtained through Nanopore Q20+ chemistry. Microbiology Resource Announcements, 13(1):online.
  • Tuo, Bin; García-Palacios, Pablo; Guo, Chao; Yan, En-Rong; Berg, Matty P; Cornelissen, Johannes H C (2024). Meta-analysis reveals that vertebrates enhance plant litter decomposition at the global scale. Nature Ecology and Evolution:online.
  • Banerjee, Samiran; Zhao, Cheng; Garland, Gina; Edlinger, Anna; García-Palacios, Pablo; Romdhane, Sana; Degrune, Florine; Pescador, David S; Herzog, Chantal; Camuy-Velez, Lennel A; Bascompte, Jordi; Hallin, Sara; Philippot, Laurent; Maestre, Fernando T; Rillig, Matthias C; van der Heijden, Marcel G A (2024). Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe. Nature Communications, 15(1):327.
  • Zhang, Yong; Cheng, Xiaoli; van Groenigen, Kees Jan; García-Palacios, Pablo; Cao, Junji; Zheng, Xunhua; Luo, Yiqi; Hungate, Bruce A; Terrer, Cesar; Butterbach-Bahl, Klaus; Olesen, Jørgen Eivind; Chen, Ji (2024). Shifts in soil ammonia-oxidizing community maintain the nitrogen stimulation of nitrification across climatic conditions. Global Change Biology, 30(1):e16989.
  • Rhodes, Jack; Zipfel, Cyril (2024). Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Schaller, Andreas. Plant Peptide Hormones and Growth Factors. New York: Springer, 23-35.
  • Gupta, Shibu; Guérin, Amandine; Herger, Aline; Hou, Xiaoyu; Schaufelberger, Myriam; Roulard, Romain; Diet, Anouck; Roffler, Stefan; Lefebvre, Valérie; Wicker, Thomas; Pelloux, Jérôme; Ringli, Christoph (2024). Growth-inhibiting effects of the unconventional plant APYRASE 7 of Arabidopsis thaliana influences the LRX/RALF/FER growth regulatory module. PLoS Genetics, 20(1):e1011087.

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