Publications

ZORA Publication List

Publications

• 2025

  • Fei, D. (2025). Exploring the Role and Mechanisms of Ubiquitin-Mediated Degradation of H1 during Reproduction in Arabidopsis (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-278124
  • Rutowicz, K., Perseus, L., Schmid, M. W., Schubert, J. S., Zörner-Pazmino, D., Bieluszewski, T., Kotlinski, M., Randall, R. S., Ziolkowski, P., Jerzmanowski, A., Bourbousse, C., Barneche, F., & Baroux, C. (2025). Linker histones enhance robustness in diurnal transcription dynamics Quantitative Plant Biology, 6, e44. https://doi.org/10.1017/qpb.2025.10033
  • Linares, A., Härter, N. C., Rannou, E., & Bischof, S. (2025). Identification of Plant Chromatin Interaction Networks Using IP-MS and co-IP In C. Baroux & C. Tatout (Eds.), Methods for Plant Nucleus and Chromatin Studies. Methods and Protocols (Vol. 2873, pp. 129–143). Springer (Bücher). https://doi.org/10.1007/978-1-0716-4228-3_8
  • Kracik-Dyer, E., & Baroux, C. (2025). 3D STED Imaging of Isolated Arabidopsis thaliana Nuclei In C. Baroux & C. Tatout (Eds.), Methods For Plant Nucleus And Chromatin Studies (Vol. 2873, pp. 263–280). Springer (Bücher). https://doi.org/10.1007/978-1-0716-4228-3_15

• 2024

  • Chong, W. W. (2024). Unravelling the molecular mechanism underlying $\textit{MEDEA}$ imprinting in $\textit{Arabidopsis thaliana}$ (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-267131
  • Rutowicz, K., Lüthi, J., de Groot, R., Holtackers, R., Yakimovich, Y., Pazmiño, D. M., Gandrillon, O., Pelkmans, L., & Baroux, C. (2024). Multiscale chromatin dynamics and high entropy in plant iPSC ancestors Journal of Cell Science, 137, jcs261703. https://doi.org/10.1242/jcs.261703
  • Li, Y. (2024). H1 Citrullination – An Atypical Modification Regulating Germline Fate in Arabidopsis (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-261295
  • Lerra, L., Panatta, M., Bär, D., Zanini, I., Tan, J. Y., Pisano, A., Mungo, C., Baroux, C., Panse, V. G., Marques, A. C., & Santoro, R. (2024). An RNA-dependent and phase-separated active subnuclear compartment safeguards repressive chromatin domains Molecular Cell, 84, 1667-1683.e10. https://doi.org/10.1016/j.molcel.2024.03.015

• 2023

  • Mermet, S., Voisin, M., Mordier, J., Dubos, T., Tutois, S., Tuffery, P., Baroux, C., Tamura, K., Probst, A. V., Vanrobays, E., & Tatout, C. (2023). Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores Plant Cell, 35, 4284–4303. https://doi.org/10.1093/plcell/koad236
  • Teano, G., Concia, L., Wolff, L., Carron, L., Biocanin, I., Adamusová, K., Fojtová, M., Bourge, M., Kramdi, A., Colot, V., Grossniklaus, U., Bowler, C., Baroux, C., Carbone, A., Probst, A. V., Schrumpfová, P. P., Fajkus, J., Amiard, S., Grob, S., … Barneche, F. (2023). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis Cell Reports, 42, 112894. https://doi.org/10.1016/j.celrep.2023.112894
  • Nowicka, A., Ferková, L., Said, M., Kovacik, M., Zwyrtková, J., Baroux, C., & Pecinka, A. (2023). Non-Rabl chromosome organization in endoreduplicated nuclei of barley embryo and endosperm tissues Journal of Experimental Botany, 74, 2527–2541. https://doi.org/10.1093/jxb/erad036
  • Ouedraogo, I., Lartaud, M., Baroux, C., Mosca, G., Delgado, L., Leblanc, O., Verdeil, J.-L., Conéjéro, G., & Autran, D. (2023). 3D cellular morphometrics of ovule primordium development in Zea mays reveal differential division and growth dynamics specifying megaspore mother cell singleness Frontiers in Plant Science, 14, 1174171. https://doi.org/10.3389/fpls.2023.1174171
  • Perseus, L. (2023). Investigating diurnal changes in the chromatin organization of A. thaliana and the involvement of linker histone H1. (Master’s thesis, University of Zurich) https://doi.org/10.5167/uzh-257499

• 2022

  • Randall, R. S., Jourdain, C., Nowicka, A., et al, Panatta, M., Santoro, R., Routh, D., & Baroux, C. (2022). Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes Nucleus, 13, 277–299. https://doi.org/10.1080/19491034.2022.2144013
  • Tatout, C., Mougeot, G., Parry, G., Baroux, C., Pradillo, M., & Evans, D. (2022). The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science Journal of Experimental Botany, 73, 1926–1933. https://doi.org/10.1093/jxb/erac005
  • Wyler, M. (2022). The epigenetic impact of transposable elements on gene expression (Dissertation, University of Zurich)
  • Schubert, J., Li, Y., Mendes, M. A., Fei, D., Dickinson, H., Moore, I., & Baroux, C. (2022). A procedure for Dex-induced gene transactivation in Arabidopsis ovules Plant Methods, 18, 41. https://doi.org/10.1186/s13007-022-00879-x

• 2021

  • Baroux, C. (2021). Three-dimensional genome organization in epigenetic regulations: cause or consequence? Current Opinion in Plant Biology, 61, 102031. https://doi.org/10.1016/j.pbi.2021.102031
  • Hernandez-Lagana, E., Mosca, G., Mendocilla-Sato, E., Pires, N., Frey, A., Giraldo-Fonseca, A., Michaud, C., Grossniklaus, U., Hamant, O., Godin, C., Boudaoud, A., Grimanelli, D., Autran, D., & Baroux, C. (2021). Organ geometry channels reproductive cell fate in the Arabidopsis ovule primordium ELife, 10, e66031. https://doi.org/10.7554/elife.66031

• 2020

  • Wyler, M., Stritt, C., Walser, J.-C., Baroux, C., & Roulin, A. C. (2020). Impact of transposable elements on methylation and gene expression across natural accessions of Brachypodium distachyon Genome Biology and Evolution, 12, 1994–2001. https://doi.org/10.1093/gbe/evaa180
  • Teano, G., Concia, L., Carron, L., Wolff, L., Adamusová, K., Fojtová, M., Bourge, M., Kramdi, A., Colot, V., Grossniklaus, U., Bowler, C., Baroux, C., Carbone, A., Probst, A. V., Procházková Schrumpfová, P., Fajkus, J., Amiard, S., Grob, S., Bourbousse, C., & Barneche, F. (2020). Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis (No. 402172; BioRxiv). https://doi.org/10.1101/2020.11.28.402172
  • Hernandez-Lagana, E., Mosca, G., Sato, E. M., Pires, N., Frey, A., Giraldo-Fonseca, A., Grossniklaus, U., Hamant, O., Godin, C., Boudaoud, A., Grimanelli, D., Autran, D., & Baroux, C. (2020). Organ geometry channels cell fate in the Arabidopsis ovule primordium (No. 226670; BioRxiv). https://doi.org/10.1101/2020.07.30.226670

• 2019

  • Rutowicz, K., Lirski, M., Mermaz, B., Teano, G., Schubert, J., Mestiri, I., Kroteń, M. A., Fabrice, T. N., Fritz, S., Grob, S., Ringli, C., Cherkezyan, L., Barneche, F., Jerzmanowski, A., & Baroux, C. (2019). Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis Genome Biology, 20, 157. https://doi.org/10.1186/s13059-019-1767-3
  • Díaz, M., Pečinková, P., Nowicka, A., Baroux, C., Sakamoto, T., Gandha, P. Y., Jeřábková, H., Matsunaga, S., Grossniklaus, U., & Pecinka, A. (2019). The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development Plant Cell, 31, 1579–1597. https://doi.org/10.1105/tpc.18.00043
  • Dumur, T., Duncan, S., Graumann, K., Desset, S., Randall, R. S., Scheid, O. M., Prodanov, D., Tatout, C., & Baroux, C. (2019). Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions Nucleus, 10, 181–212. https://doi.org/10.1080/19491034.2019.1644592

• 2018

  • Schubert, J. A. (2018). Investigating the mechanism and role of linker histone dynamics during plant reproduction (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-156766

• 2017

  • Kotliński, M., Knizewski, L., Muszewska, A., Rutowicz, K., Lirski, M., Schmidt, A., Baroux, C., Ginalski, K., & Jerzmanowski, A. (2017). Phylogeny-based systematization of arabidopsis proteins with histone H1 globular domain Plant Physiology, 174, 27–34. https://doi.org/10.1104/pp.16.00214

• 2015

  • Baroux, C. (2015). Chromatin dynamics in sexual plant reproduction (Habilitation, University of Zurich) https://doi.org/10.5167/uzh-262157